Avian Influenza Response

Background

High pathogenicity avian influenza (HPAI or “bird flu”) is a viral disease of birds that can, on rare occasions, infect humans and mammals. The disease can cause high mortality rates in domestic poultry, and severe economic losses, and has also become a threat to wild bird populations. South Africa recorded at least 7500 deaths in seabirds in 2018, due to the clade 2.3.4.4b H5N8 virus, and nearly 25 000 deaths in 2021 and 2022, due to the clade 2.3.4.4b H5N1 virus. Swift (Greater Crested) Terns were worst affected in 2018 and Endangered Cape Cormorants in 2021 and 2022, but at least 1000 Critically Endangered African Penguins have also died from the disease in Namibia and South Africa. In July 2025, there were increasing reports of sick and dead Hartlaub’s Gulls and laboratory confirmation of infection in Hartlaub’s Gulls and Great White Pelicans in the Western Cape. Worldwide, except for Oceania but including Antarctica, mass mortalities have been reported in colony-breeding seabirds and other wild bird species since 2021, some with population-level effects.

Monitoring of HPAI outbreaks is necessary to learn about the disease and monitor its progress. However, bird populations, and seabirds in particular, are already facing a variety of challenges including pollution, climate change, lack of breeding space and food scarcity. The effects of disease should be separated from other pressures, to ensure that conservation efforts continue to be correctly applied.

The OCIMS South African Seabird Bird Flu Reporting Tool has been created to allow efficient and widespread reporting of HPAI cases in seabirds and to communicate the results clearly. Anyone finding a sick or dead seabird is requested to report via the web form or app. Live seabirds can also be reported to a seabird rehabilitation centre.

There have been cases of HPAI H5N1 infections in humans and pets overseas, though in small numbers so, although the risk is low, please avoid touching sick and dead birds and keep your pets away from them too.

Seabird Rehabilitation Facilities

Western & Eastern Cape


SANCCOB
Cape Town: 021 557 6155 / 078 638 3731 (after hours)
Gqeberha: 041 583 1830 / 064 019 8936 (after hours)
reception@sanccob.co.za

African Penguin and Seabird Sanctuary
Gansbaai/ Hermanus: 072 598 7117
apss@dict.org.za

SAPREC
Mossel Bay: 082 364 3382
info@saprec.co.za

Tenikwa
Plettenberg Bay: 082 486 1515
info@tenikwa.co.za

KwaZulu-Natal


CROW (Sea birds excluding penguins)
Umkomaas to Northern KZN: 031 462 1127 / 031 469 0583
After hours: 083 212 5281
info@crowkzn.co.za

SCAR (Sea birds excluding penguins)
Umkomaas to Southern KZN : 083 246 6765
admin@scar-rescue.co.za

Ushaka Seaworld (Penguins only)
KZN coast: 031 328 8222

Mobirise Website Builder

The data flow process (Source: ESRI, 2019)

The OCIMS contribution to the seabird avian influenza response

The OCIMS team, being active participants in various working groups, was a approached for a technological solution to assist in the data capture and data visualisation processes pertaining to the avian influenza outbreak in 2021. The SA seabird bird flu (avian influenza) form was subsequently developed with the intention of serving as a data capture tool and facilitating the immediate visualisation and interrogation of data. The form itself is accessible via the Survey123 application or a web browser. The immediate benefit of the form-based interface is having a standardised means of data capture, eliminating the need for manual standardisation and consolidation. The form submits data from all users to a centralised (geo)database managed by the OCIMS team, which is then pushed to a dashboard and webmap for visualisation. During the 2021 avian influenza outbreak, a multitude of stakeholders, including officials based in government departments, parastals/entities and NGOs were trained in the use of the form.

Contributors

  1. Government
    Western Cape Government: Department of Agriculture, Western Cape Government: Department of Local Government (Disaster Risk Management), City of Cape Town, Overberg District Municipality
  2. Parastals/entities
    SANParks
  3. Other contributors
    SANCCOB, SAMBRR, Dyer Island Conservation Trust, BirdLife SA, Dwarskersbos Snake Rescue, general public

© Copyright 2025 DFFE. All Rights Reserved.

No Code Website Builder